rareEquation: Calculate rarefaction using formula

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Calculate rarefaction using formula

Description

Calculate rarefaction using formula

Usage

rareEquation(
  counts,
  samples = unique(round(sum(counts) * seq(0.1, 1, 0.1))),
  minObs = 1
)

Arguments

counts	Counts of species
samples	Vector of numbers of draws to calculate rarefaction at
minObs	Minimum number of counts to be counted as present e.g. minObs=2 discards singletons

Value

Vector with predicted rarefied counts for entries and the sampled number of reads for names

See Also

rarefy, link{rarefyCounts}

Examples

rareEquation(1:20)

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.