read.blat | R Documentation |
Read a blat file
read.blat( fileName, skips = 5, calcScore = TRUE, fixStarts = TRUE, nCols = 21, filterFunction = NULL, ... )
fileName |
name of file |
skips |
number of lines to skip (5 for a normal blat file) |
calcScore |
calculate score column? |
fixStarts |
convert start to 1-based? |
nCols |
21 (no alignments) or 23 columns (alignments) |
filterFunction |
if not NULL then pass the output data.frame to this function and filter by logical value returned |
... |
additional arguments to read.table |
dataframe of blat data
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