multiRunBlatNoServer: Run blat from parallel blat executables

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Run blat from parallel blat executables

Description

Run blat from parallel blat executables

Usage

multiRunBlatNoServer(
  reads,
  refs,
  outFile,
  nCore = 4,
  tmpDir = tempdir(),
  isGz = grepl(".gz$", outFile),
  ...
)

Arguments

reads	named vector of sequences
refs	named vector of references
outFile	file to write blat to (if ends in .gz then isGz defaults to true and writes to gzipped file)
nCore	number of cores to use
tmpDir	a directory to write tempfiles to
isGz	if TRUE write to gz file else normal file
...	additional arguments to runBlatNoServer

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.