read.phd: Read a single-read Sanger phred .phd file
In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses
read.phd R Documentation
Read a single-read Sanger phred .phd file
Description
Read a single-read Sanger phred .phd file
Usage
read.phd(fileName, trimQual = -Inf)
Arguments
fileName
name of file
trimQual
trim bases with quality lower than trimQual from start and end
Value
vector of sequence and space seperated qualities
Examples
phd<-'Some
extra lines
BEGIN_DNA
c 9 6
t 9 18
c 10 26
c 19 38
END_DNA
more
extra lines'
read.phd(textConnection(phd))
sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.
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| read.phd | R Documentation |
Read a single-read Sanger phred .phd file
Description
Read a single-read Sanger phred .phd file
Usage
read.phd(fileName, trimQual = -Inf)
Arguments
fileName |
name of file |
trimQual |
trim bases with quality lower than trimQual from start and end |
Value
vector of sequence and space seperated qualities
Examples
phd<-'Some extra lines BEGIN_DNA c 9 6 t 9 18 c 10 26 c 19 38 END_DNA more extra lines' read.phd(textConnection(phd))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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