readFaDir | R Documentation |
Read in a bunch of fasta files in a target directory
readFaDir( dir = ".", suffix = "\\.(fn?a|fasta)$", recursive = FALSE, vocal = FALSE, ... )
dir |
target directory |
suffix |
regex to select file names |
recursive |
if TRUE recurse through data directory |
vocal |
if TRUE display status message for each file loading |
... |
additional arguments to read.fa |
data.frame with columns name, seq and file
tmpDir<-tempdir() files<-file.path(tmpDir,sprintf('%d.fa',1:9)) for(ii in files){ tmp<-generateFasta(5,10:20,c('A','C','T','G')) write.fa(tmp$name,tmp$seq,ii) } seqs<-readFaDir(tmpDir)
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