samView | R Documentation |
Call samtools view on a sam/bam file
samView( fileName, samArgs = "", ..., samtoolsBinary = "samtools", vocal = FALSE, samCommand = "view" )
fileName |
vector of sam/bam files to read |
samArgs |
1 element character vector of args to pass to samtools |
... |
additional arguments for read.sam |
samtoolsBinary |
location of samtools |
vocal |
if TRUE print status messages |
samCommand |
which samtools tool to run |
data.frame with columns as read.sam
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