multiBlatReadsVsRefs: Run blatReadsVsRefs in parallel

In sherrillmix/dnar: Miscellaneous functions to deal with bioinformatic analyses

Run blatReadsVsRefs in parallel

Description

Run blatReadsVsRefs in parallel

Usage

multiBlatReadsVsRefs(
  reads,
  refs,
  outFile,
  nCore = 4,
  tmpDir = tempdir(),
  isGz = grepl(".gz$", outFile),
  ...
)

Arguments

reads	vector of query reads with names
refs	vector of query refs with names
outFile	file to write blat to (if ends in .gz then isGz defaults to true and writes to gzipped file)
nCore	number of cores to use
tmpDir	directory to store work files
isGz	if TRUE write to gz file else normal file
...	additional arguments for blatReadsVsRefs

sherrillmix/dnar documentation built on July 18, 2022, 10:07 p.m.