multiBlatReadsVsRefs | R Documentation |
Run blatReadsVsRefs in parallel
multiBlatReadsVsRefs( reads, refs, outFile, nCore = 4, tmpDir = tempdir(), isGz = grepl(".gz$", outFile), ... )
reads |
vector of query reads with names |
refs |
vector of query refs with names |
outFile |
file to write blat to (if ends in .gz then isGz defaults to true and writes to gzipped file) |
nCore |
number of cores to use |
tmpDir |
directory to store work files |
isGz |
if TRUE write to gz file else normal file |
... |
additional arguments for blatReadsVsRefs |
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