filterByTermByAccessionLevel: Filter df according to query matches only within accession...

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

Performs fts search on the data frame according to the query, only searching in the columns corresponding to specified accession levels of interest

Usage

filterByTermByAccessionLevel(
  query,
  df,
  acc_levels = c("run", "experiment", "sample", "gsm")
)

Arguments

query	Query to be passed to MATCH operator (for fts)
df	Data frame to be filtered
acc_levels	Accession levels to search within (choose from: run, experiment, sample, study, gsm, gse); defaults to c("run", "experiment", "sample", "gsm")

Value

Filtered df (containing only rows matching query within specified accession levels)

See Also

Other Workflow functions: addMissingSamples(), convertAccession(), filterByTerm(), searchForAccession()

Other Manipulation functions: filterByTerm(), orderDFAccessions()

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.