orderDFAccessions: Order df rows in accession order
In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description Usage Arguments Value See Also Examples

Order df rows in accession order

orderDFAccessions(
  df,
  acc_order = c("study", "sample", "experiment", "run", "gsm"),
  na.last = TRUE
)

`df`	Data frame to be ordered (must contain columns corresponding to types specified in `acc_order`, i.e. study_accession, sample_accession, experiment_accession, run_accession, gsm).
`acc_order`	A character vector with accession levels to be used for ordering (their order specifies which accession level is taken into account first). Default value lists all possible elements.
`na.last`	Logical denoting whether NA values should be placed last. Defaults to TRUE.

Data frame with rows ordered accordingly. The row names are reset.

Other Manipulation functions: filterByTermByAccessionLevel(), filterByTerm()

# Use for ordering rows within df after manipulating it, e.g.: 
startSpiderSeqRDemo()
df1 <- searchAnywhere("trimkd")
df2 <- searchAnywhere("arabidopsis")
df <- rbind(df1, df2)
df <- orderDFAccessions(df)