| 'bestGrouping,BioData-method |
Man page
|
| 'rfCluster_col,BioData-method |
Man page
|
| 'rfCluster_row,BioData-method |
Man page
|
| .onAttach |
Source code
|
| BioData |
Man page
|
| CellCycle |
Man page
|
| CellCycleGenes |
Man page
|
| CodonHeatmap |
Man page
|
| CodonHeatmap,tRNAMINT-method |
Man page
|
| Cpp_FindAllMarkers |
Man page
|
| Cpp_FindAllMarkers,BioData-method |
Man page
|
| CreateBin |
Man page
|
| CreateBin,BioData-method |
Man page
|
| DimReduction |
Man page
|
| DimReduction,BioData-method |
Man page
|
| Epigenetic |
Man page
|
| Get_PartialTest_Obj |
Man page
|
| Get_PartialTest_Obj,BioData-method |
Man page
|
| H5Anno2df |
Man page
|
| H5Anno2df,BioData-method |
Man page
|
| H5Anno2df,cellexalvrR-method |
Man page
|
| IdentifyMarkerGenes |
Man page
|
| IdentifyMarkerGenes,BioData-method |
Man page
|
| Make3D4obj |
Man page
|
| Make3D4obj,BioData-method |
Man page
|
| MicroArray |
Man page
|
| PartialTests |
Man page
|
| PartialTests,BioData-method |
Man page
|
| SQLite_ExpressionSummary |
Man page
|
| SQLite_ExpressionSummary,BioData-method |
Man page
|
| SQLite_SampleSummary |
Man page
|
| SQLite_SampleSummary,BioData-method |
Man page
|
| SeuratVarGenes |
Man page
|
| SeuratVarGenes,BioData-method |
Man page
|
| Seurat_FindAllMarkers |
Man page
|
| Seurat_FindAllMarkers,BioData-method |
Man page
|
| SingleCells |
Man page
|
| Split4Geo |
Man page
|
| Split4Geo,BioData-method |
Man page
|
| TestData |
Man page
|
| ZScore |
Source code
|
| addCellCyclePhase |
Man page
|
| addCellCyclePhase,BioData-method |
Man page
|
| add_to_stat |
Man page
|
| add_to_stat,BioData-method |
Man page
|
| as_BioData |
Man page
Man page
|
| as_BioData,Seurat-method |
Man page
|
| as_BioData,cellexalvrR-method |
Man page
|
| as_BioData,character-method |
Man page
|
| as_BioData,data.frame-method |
Man page
|
| as_BioData,list-method |
Man page
|
| as_BioData,matrix-method |
Man page
|
| as_Seurat |
Man page
|
| as_Seurat,BioData-method |
Man page
|
| as_cellexalvr |
Man page
Man page
|
| as_cellexalvr,BioData-method |
Man page
|
| auto_order_grouping |
Man page
|
| auto_order_grouping,BioData-method |
Man page
|
| auto_reorder_grouping |
Man page
|
| auto_reorder_grouping,BioData-method |
Man page
|
| bestGrouping |
Man page
|
| changeNames |
Man page
|
| changeNames,BioData-method |
Man page
|
| cleanUpGroup |
Man page
|
| cleanUpGroup,BioData-method |
Man page
|
| clusters |
Man page
|
| clusters,BioData-method |
Man page
|
| clusters_gene |
Man page
|
| clusters_gene,BioData-method |
Man page
|
| collaps |
Man page
|
| collaps,BioData-method |
Man page
|
| collapse |
Man page
|
| collapse,BioData-method |
Man page
|
| collapse2codons |
Man page
|
| collapse2codons,tRNAMINT-method |
Man page
|
| colnames |
Man page
|
| colnames,BioData-method |
Man page
|
| colors_4 |
Man page
|
| colors_4,BioData-method |
Man page
|
| combineGroupings |
Man page
|
| combineGroupings,BioData-method |
Man page
|
| complexHeatmap |
Man page
|
| complexHeatmap,BioData-method |
Man page
|
| convert_to |
Man page
|
| convert_to,BioData-method |
Man page
|
| copy_grouping |
Man page
|
| copy_grouping,BioData-method |
Man page
|
| copy_mds_objects |
Man page
|
| copy_mds_objects,BioData-method |
Man page
|
| createDuplicates |
Man page
|
| createDuplicates,BioData-method |
Man page
|
| createRFgrouping_col |
Man page
|
| createRFgrouping_col,BioData-method |
Man page
|
| createRFgrouping_row |
Man page
|
| createRFgrouping_row,BioData-method |
Man page
|
| createStats |
Man page
|
| createStats,NGSexpressionSet-method |
Man page
|
| dataframe2biodata |
Man page
|
| dataframe2biodata,BioData-method |
Man page
|
| defineGOIs |
Man page
|
| defineGOIs,cellexalvr-method |
Man page
|
| defineHeatmapColors |
Man page
|
| defineHeatmapColors,BioData-method |
Man page
|
| define_grouping |
Man page
|
| define_grouping,BioData-method |
Man page
|
| export.data |
Man page
|
| export.data,BioData-method |
Man page
|
| extractCodonInformation |
Man page
|
| extractCodonInformation,tRNAMINT-method |
Man page
|
| filterGenes |
Man page
|
| filterGenes,BioData-method |
Man page
|
| findDuplicates |
Man page
|
| findDuplicates,BioData-method |
Man page
|
| findOverlapWithCells |
Man page
|
| findOverlapWithCells,BioData-method |
Man page
|
| fit_4_rf |
Man page
|
| fit_4_rf,BioData-method |
Man page
|
| force.numeric |
Man page
|
| force.numeric,BioData-method |
Man page
|
| get.genes.cor.to |
Man page
|
| get.genes.cor.to,BioData-method |
Man page
|
| getEnsembl |
Man page
|
| getEnsembl,BioData-method |
Man page
|
| getGeneInfo |
Man page
|
| getGeneInfo,BioData-method |
Man page
|
| getGenesExpressedHigherThanExpected |
Man page
|
| getGenesExpressedHigherThanExpected,BioData-method |
Man page
|
| getNgenesFromMultiGroupStats |
Man page
|
| getNgenesFromMultiGroupStats,BioData-method |
Man page
|
| getSymbols |
Man page
|
| getSymbols,BioData-method |
Man page
|
| getTopSigGenes |
Man page
|
| getTopSigGenes,BioData-method |
Man page
|
| group_intersect_order |
Man page
|
| group_intersect_order,BioData-method |
Man page
|
| groups_boxplot |
Man page
|
| groups_boxplot,BioData-method |
Man page
|
| heatPlotTimelines2D |
Man page
|
| heatPlotTimelines2D,BioData-method |
Man page
|
| heatmap.3 |
Source code
|
| human.CellSurface |
Man page
|
| human.tfs |
Man page
|
| loadObj |
Man page
|
| loadObj,BioData-method |
Man page
|
| load_CellexalVR_selection |
Man page
|
| load_CellexalVR_selection,BioData-method |
Man page
|
| load_database |
Source code
|
| logThis |
Man page
|
| logThis,BioData-method |
Man page
|
| mds |
Man page
|
| mds,BioData-method |
Man page
|
| merge |
Man page
|
| merge,BioData-method |
Man page
|
| merge_cells |
Man page
|
| merge_cells,BioData-method |
Man page
|
| mouse.CellSurface |
Man page
|
| mouse.tfs |
Man page
|
| normalize |
Man page
|
| normalize,BioData-method |
Man page
|
| normalize,MicroArray-method |
Man page
|
| normalize,SingleCells-method |
Man page
|
| normalize_R_buggy |
Man page
|
| normalize_R_buggy,BioData-method |
Man page
|
| ontologyLogPage |
Man page
|
| ontologyLogPage,BioData-method |
Man page
|
| plot2col_barplot |
Man page
|
| plot2col_barplot,BioData-method |
Man page
|
| plotCodonUsage |
Man page
|
| plotCodonUsage,BioData-method |
Man page
|
| plotLegend |
Man page
|
| plotLegend,BioData-method |
Man page
|
| plotMDS |
Man page
|
| plotMDS,BioData-method |
Man page
|
| plot_velocyto |
Man page
|
| plot_velocyto,BioData-method |
Man page
|
| positivesOnly |
Man page
|
| positivesOnly,BioData-method |
Man page
|
| preprocess |
Man page
|
| preprocess,BioData-method |
Man page
|
| pseudotimeTest |
Man page
|
| pseudotimeTest,BioData-method |
Man page
|
| pseudotimeTest3D |
Man page
|
| pseudotimeTest3D,BioData-method |
Man page
|
| pwd |
Man page
|
| quality_of_fit |
Man page
|
| quality_of_fit,BioData-method |
Man page
|
| readLoomFile |
Man page
|
| readLoomFile,BioData-method |
Man page
|
| reduceTo |
Man page
|
| reduceTo,BioData-method |
Man page
|
| removeNeg |
Man page
|
| removeNeg,BioData-method |
Man page
|
| renew |
Man page
|
| renew,BioData-method |
Man page
|
| reorder.genes |
Man page
|
| reorder.genes,BioData-method |
Man page
|
| reorder.samples |
Man page
|
| reorder.samples,BioData-method |
Man page
Man page
|
| reorder_grouping |
Man page
|
| reorder_grouping,BioData-method |
Man page
|
| reorder_on_wilcox_results |
Man page
|
| reorder_on_wilcox_results,BioData-method |
Man page
|
| rfCluster_col |
Man page
|
| rfCluster_row |
Man page
|
| rmdLink |
Man page
|
| rmdLink,BioData-method |
Man page
|
| rownames |
Man page
|
| rownames,BioData-method |
Man page
|
| runStats_inThread |
Man page
|
| runStats_inThread,BioData-method |
Man page
|
| sampleCodonUsage |
Man page
|
| sampleCodonUsage,tRNAMINT-method |
Man page
|
| saveObj |
Man page
|
| saveObj,ANY-method |
Man page
|
| show |
Man page
|
| show,BioData-method |
Man page
|
| simpleAnova |
Man page
|
| simpleAnova,BioData-method |
Man page
|
| stat_table |
Man page
|
| stat_table,tRNAMINT-method |
Man page
|
| tRF.typeHeatmap |
Man page
|
| tRF.typeHeatmap,tRNAMINT-method |
Man page
|
| tRNAMINT |
Man page
|
| tRNA_stats |
Man page
|
| tRNA_stats,tRNAMINT-method |
Man page
|
| transpose |
Man page
|
| transpose,02_transpose-method |
Man page
|
| useInbuiltGOIlists |
Man page
|
| useInbuiltGOIlists,BioData-method |
Man page
|
| vioplot |
Man page
|
| vioplot,Rscexv-method |
Man page
|
| z.score |
Man page
|
| z.score,BioData-method |
Man page
|
