Global functions | |
---|---|
'bestGrouping,StefansExpressionSet-method | Man page |
'predict.rf,SingleCellsNGS-method | Man page |
'rfCluster_col,StefansExpressionSet-method | Man page |
'rfCluster_row,StefansExpressionSet-method | Man page |
FromCountsObj | Man page |
FromCountsObj,FromCountsObj-method | Man page |
Make3D4obj | Man page |
Make3D4obj,StefansExpressionSet-method | Man page |
NGSexpressionSet | Man page Man page |
NGSexpressionSet,NGSexpressionSet-method | Man page |
NGSexpressionSet-package | Man page |
PMID25158935exp | Man page |
PMID25158935samples | Man page |
SingleCellsNGS | Man page Man page |
SingleCellsNGS,SingleCellsNGS-method | Man page |
SingleCellsNGS-package | Man page |
StefansExpressionSet | Man page Man page |
StefansExpressionSet,data.frame-method | Man page |
add2usedObj | Man page |
add2usedObj,add2usedObj-method | Man page |
addAnnotation | Man page |
addAnnotation,StefansExpressionSet-method | Man page |
addCluster | Man page |
addCluster,Clusters-method | Man page |
addGeneColGroup | Man page |
addGeneColGroup,StefansExpressionSet-method | Man page |
addSampleColGroup | Man page |
addSampleColGroup,StefansExpressionSet-method | Man page |
add_to_stat | Source code |
anayse_working_set | Man page |
anayse_working_set,NGSexpressionSet-method | Man page |
as_BioData | Man page |
as_NGSexpressionSet | Man page |
bestGrouping | Man page |
check.depth | Man page |
check.depth,NGSexpressionSet-method | Man page |
clusters | Man page |
clusters,StefansExpressionSet-method | Man page |
coexprees4gene | Man page |
coexprees4gene,StefansExpressionSet-method | Man page |
collaps | Man page |
collaps,StefansExpressionSet-method | Man page |
colors_4 | Man page |
colors_4,StefansExpressionSet-method | Man page |
complexHeatmap | Man page |
complexHeatmap,StefansExpressionSet-method | Man page |
cor2cytoscape | Man page |
cor2cytoscape,StefansExpressionSet-method | Man page |
corMat | Man page |
corMat,StefansExpressionSet-method | Man page |
createRFgrouping_col | Man page |
createRFgrouping_col,StefansExpressionSet-method | Man page |
createRFgrouping_row | Man page |
createRFgrouping_row,StefansExpressionSet-method | Man page |
createStats | Man page |
createStats,NGSexpressionSet-method | Man page |
defineHeatmapColors | Man page |
defineHeatmapColors,SingleCellsNGS-method | Man page |
describe.probeset | Man page |
describe.probeset,StefansExpressionSet-method | Man page |
difference | Man page |
difference,Clusters-method | Man page |
drop.samples | Man page |
drop.samples,StefansExpressionSet-method | Man page |
export.data | Man page |
export.data,StefansExpressionSet-method | Man page |
export4GEDI | Man page |
export4GEDI,StefansExpressionSet-method | Man page |
force.numeric | Man page |
force.numeric,StefansExpressionSet-method | Man page |
forceAbsoluteUniqueSample | Man page |
forceAbsoluteUniqueSample,character-method | Man page |
getAnnotation4probesets | Man page |
getAnnotation4probesets,StefansExpressionSet-method | Man page |
getProbesetsFromStats | Man page |
getProbesetsFromStats,StefansExpressionSet-method | Man page |
getProbesetsFromValues | Man page |
getProbesetsFromValues,StefansExpressionSet-method | Man page |
get_gene_list | Man page |
get_gene_list,StefansExpressionSet-method | Man page |
gg.heatmap.list | Man page |
gg.heatmap.list,StefansExpressionSet-method | Man page |
ggplot.gene | Man page |
ggplot.gene,StefansExpressionSet-method | Man page |
group.hclust | Man page |
group.hclust,StefansExpressionSet-method | Man page |
groups.boxplot | Man page |
groups.boxplot,StefansExpressionSet-method | Man page |
heatmap.3 | Source code |
identifyBestGrouping | Man page |
identifyBestGrouping,SingleCellsNGS-method | Man page |
interesting_genes | Man page |
interesting_genes,SingleCellsNGS-method | Man page |
loadObj | Man page |
loadObj,StefansExpressionSet-method | Man page |
log2 | Man page |
log2,StefansExpressionSet-method | Man page |
mds | Man page |
mds,StefansExpressionSet-method | Man page |
melt | Man page |
melt,StefansExpressionSet-method | Man page |
minValueExpr | Man page |
minValueExpr,SingleCellsNGS-method | Man page |
name_4_IDs | Man page |
name_4_IDs,StefansExpressionSet-method | Man page |
normalize | Man page Man page Man page Man page |
normalize,NGSexpressionSet-method | Man page |
normalize,SingleCellsNGS-method | Man page |
normalize,StefansExpressionSet-method | Man page Man page |
pcorMat | Man page |
pcorMat,StefansExpressionSet-method | Man page |
plot.heatmaps | Man page |
plot.heatmaps,StefansExpressionSet-method | Man page |
plot.legend | Man page |
plot.legend,plot.legend-method | Man page |
plot.probeset | Man page |
plot.probeset,StefansExpressionSet-method | Man page |
plot.stats.as.heatmap | Man page |
plot.stats.as.heatmap,StefansExpressionSet-method | Man page |
plot_histogram | Man page |
plot_histogram,StefansExpressionSet-method | Man page |
predict.rf | Man page |
preprocess | Man page |
preprocess,NGSexpressionSet-method | Man page |
pwd | Man page |
qualityTest | Man page |
qualityTest,SingleCellsNGS-method | Man page |
quality_of_fit | Man page |
quality_of_fit,Clusters-method | Man page |
ranks | Man page |
ranks,StefansExpressionSet-method | Man page |
read.bams | Man page |
read.bams,NGSexpressionSet-method | Man page |
reads.taken | Man page |
reads.taken,NGSexpressionSet-method | Man page |
red | Man page |
reduce.Obj | Man page |
reduce.Obj,StefansExpressionSet-method | Man page |
removeBatch | Man page |
removeBatch,NGSexpressionSet-method | Man page |
reorder.genes | Man page |
reorder.genes,StefansExpressionSet-method | Man page |
reorder.samples | Man page |
reorder.samples,StefansExpressionSet-method | Man page |
restrictSamples | Man page |
restrictSamples,StefansExpressionSet-method | Man page |
rfCluster_col | Man page |
rfCluster_row | Man page |
saveObj | Man page |
saveObj,StefansExpressionSet-method | Man page |
sd.filter | Man page |
sd.filter,stat_sd.filter-method | Man page |
set.outpath | Man page |
set.outpath,StefansExpressionSet-method | Man page |
show | Man page |
show,StefansExpressionSet-method | Man page |
simpleAnova | Man page Man page |
simpleAnova,SingleCellsNGS-method | Man page |
simpleAnova,StefansExpressionSet-method | Man page |
transpose | Man page |
transpose,02_transpose-method | Man page |
update.measurements | Man page |
update.measurements,SingleCellsNGS-method | Man page |
write.data | Man page |
write.data,StefansExpressionSet-method | Man page |
writeStatTables | Man page |
writeStatTables,StefansExpressionSet-method | Man page |
z.score | Man page |
z.score,StefansExpressionSet-method | Man page |
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