API for taxonomicallyinformedannotation/tima-r
Taxonomically Informed Metabolite Annotation
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| annotate_masses | Man page Source code |
| annotate_spectra | Man page Source code |
| benchmark_taxize_spectra | Man page Source code |
| calculate_entropy_score | Man page Source code |
| calculate_mass_of_m | Man page Source code |
| change_params_small | Man page Source code |
| clean_bio | Man page Source code |
| clean_chemo | Man page Source code |
| clean_collapse | Man page Source code |
| columns_model | Man page Source code |
| complement_metadata_structures | Man page Source code |
| copy_backbone | Man page Source code |
| create_components | Man page Source code |
| create_dir | Man page Source code |
| create_edges | Man page Source code |
| create_edges_spectra | Man page Source code |
| decorate_bio | Man page Source code |
| decorate_chemo | Man page Source code |
| decorate_masses | Man page Source code |
| dist_get | Man page Source code |
| dist_groups | Man page Source code |
| export_output | Man page Source code |
| export_params | Man page Source code |
| export_spectra_rds | Man page Source code |
| extract_spectra | Man page Source code |
| fake_annotations_columns | Man page Source code |
| fake_ecmdb | Man page Source code |
| fake_hmdb | Man page Source code |
| fake_lotus | Man page Source code |
| fake_sop_columns | Man page Source code |
| filter_annotations | Man page Source code |
| filter_high_confidence_only | Man page Source code |
| get_default_paths | Man page Source code |
| get_example_files | Man page Source code |
| get_example_sirius | Man page Source code |
| get_file | Man page Source code |
| get_gnps_tables | Man page Source code |
| get_last_version_from_zenodo | Man page Source code |
| get_massbank_spectra | Man page Source code |
| get_organism_taxonomy_ott | Man page Source code |
| get_params | Man page Source code |
| go_to_cache | Man page Source code |
| harmonize_adducts | Man page Source code |
| harmonize_names_sirius | Man page Source code |
| harmonize_spectra | Man page Source code |
| import_spectra | Man page Source code |
| install | Man page Source code |
| load_yaml_files | Man page Source code |
| log_debug | Man page Source code |
| log_pipe | Man page Source code |
| parse_adduct | Man page Source code |
| parse_cli_params | Man page Source code |
| parse_yaml_params | Man page Source code |
| pre_harmonize_names_sirius | Man page Source code |
| prepare_annotations_gnps | Man page Source code |
| prepare_annotations_sirius | Man page Source code |
| prepare_annotations_spectra | Man page Source code |
| prepare_features_components | Man page Source code |
| prepare_features_edges | Man page Source code |
| prepare_features_tables | Man page Source code |
| prepare_libraries_rt | Man page Source code |
| prepare_libraries_sop_closed | Man page Source code |
| prepare_libraries_sop_ecmdb | Man page Source code |
| prepare_libraries_sop_hmdb | Man page Source code |
| prepare_libraries_sop_lotus | Man page Source code |
| prepare_libraries_sop_merged | Man page Source code |
| prepare_libraries_spectra | Man page Source code |
| prepare_params | Man page Source code |
| prepare_taxa | Man page Source code |
| read_from_sirius_zip | Man page Source code |
| replace_id | Man page Source code |
| round_reals | Man page Source code |
| run_app | Man page Source code |
| sanitize_spectra | Man page Source code |
| select_annotations_columns | Man page Source code |
| select_sirius_columns_canopus | Man page Source code |
| select_sirius_columns_formulas | Man page Source code |
| select_sirius_columns_structures | Man page Source code |
| select_sop_columns | Man page Source code |
| split_tables_sop | Man page Source code |
| tima | Man page |
| tima-package | Man page |
| tima_full | Man page Source code |
| transform_score_sirius_csi | Man page Source code |
| weight_annotations | Man page Source code |
| weight_bio | Man page Source code |
| weight_chemo | Man page Source code |
