API for vallenderlab/MicrobiomeR
Analyze Microbiome Data
| Global functions | |
|---|---|
| %>% | Man page |
| MicrobiomeR | Man page |
| MicrobiomeR-package | Man page |
| MicrobiomeR_Formats | Man page |
| MicrobiomeR_Workflow | Man page |
| agglomerate_taxmap | Man page Source code |
| alpha_diversity_measures | Man page Source code |
| alpha_diversity_plot | Man page Source code |
| alpha_diversity_plots | Man page Source code |
| as_MicrobiomeR_format | Man page Source code |
| as_analyzed_format | Man page Source code |
| as_basic_format | Man page Source code |
| as_custom_format | Man page Source code |
| as_phyloseq_format | Man page Source code |
| as_raw_format | Man page Source code |
| combination_palette | Man page Source code |
| convert_proportions | Man page Source code |
| correlation_data | Man page Source code |
| correlation_plot | Man page Source code |
| correlation_plots | Man page Source code |
| cov_filter | Man page |
| create_phyloseq | Man page Source code |
| create_pub_table | Man page |
| create_taxmap | Man page Source code |
| get_color_palette | Man page Source code |
| heat_tree_parameters | Man page Source code |
| heat_tree_plots | Man page Source code |
| is_analyzed_format | Man page Source code |
| is_basic_format | Man page Source code |
| is_phyloseq_format | Man page Source code |
| is_raw_format | Man page Source code |
| melt_taxmap | Man page Source code |
| metacoder_comp_func_1 | Man page |
| order_metacoder_data | Man page Source code |
| ordination_plot | Man page Source code |
| ordination_plots | Man page Source code |
| otu_id_filter | Man page Source code |
| otu_prevalence_filter | Man page |
| otu_proportion_filter | Man page Source code |
| output_dir | Man page Source code |
| parse_taxonomy_silva_128 | Man page Source code |
| permanova | Man page Source code |
| phyloseq_silva_2 | Man page |
| phyloseq_silva_3 | Man page |
| pick_new_outgroup | Man page Source code |
| plot_limits | Man page Source code |
| raw_silva_2 | Man page |
| raw_silva_3 | Man page |
| root_by_longest_edge | Man page Source code |
| root_phyloseq_tree | Man page Source code |
| sample_id_filter | Man page Source code |
| save_alpha_diversity_plots | Man page Source code |
| save_correlation_plots | Man page Source code |
| save_heat_tree_plots | Man page |
| save_ordination_plots | Man page Source code |
| save_stacked_barplots | Man page Source code |
| save_top_coefficients_barplot | Man page Source code |
| scico_palette | Man page Source code |
| stacked_barplot | Man page Source code |
| stacked_barplots | Man page Source code |
| taxa_prevalence_filter | Man page |
| taxon_id_filter | Man page Source code |
| top_coefficients_barplot | Man page Source code |
| transformer | Man page |
| transposer | Man page Source code |
| treatment_matrix | Man page Source code |
| validate_MicrobiomeR_format | Man page Source code |
| viridis_magma_palette | Man page Source code |
| viridis_palette | Man page Source code |
| vlookup | Man page |
| which_format | Man page Source code |
