compareFits.MeanSizeComps: Compare fits to mean size comps by fleet among several model...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Compare fits to mean size comps by fleet among several model runs

Description

Function to compare fits to mean size comps by fleet among several model runs.

Usage

compareFits.MeanSizeComps(
  objs = NULL,
  mdfr = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  years = "all",
  ci = 0.8,
  plot1stObs = TRUE,
  facet_grid = "m+s~x",
  scales = "free_y",
  linesize = 1,
  pdf = NULL,
  showPlot = FALSE,
  verbose = FALSE
)

Arguments

objs	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
mdfr	melted dataframe from call to extractFits.MeanSizeComps() (as alternative to objs)
fleets	names of fleets to include (or "all")
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', or 'total')
years	years to plot, as numerical vector (or "all" to plot all years)
ci	confidence interval
plot1stObs	flag (T/F) to plot observations only from first case
facet_grid	faceting formula for ggplot2::facet_grid()
scales	scales parameter for ggplot2::facet_grid()
linesize	line width (in mm)
pdf	name for output pdf file
showPlot	flag (T/F) to show plot
verbose	flag (T/F) to print diagnostic information

Details

Uses extractFits.MeanSizeComps() to extract data. Also uses reshape2::dcast(), wtsUtilities::calcCIs(), wtsUtilities::printGGList().

Value

list of ggplot2 objects, with captions as names

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.