compareResults.Pop.Biomass1: Function to compare population biomass estimates by year...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to compare population biomass estimates by year among several models

Description

This function compares biomass estimates (aggregated or as size comps, depending on "type") by year among several models.

Usage

compareResults.Pop.Biomass1(
  objs,
  type = c("B_yxmsz", "B_yxmz", "B_yxz", "B_yxms", "B_yxm", "B_yx"),
  years = "all",
  numRecent = 15,
  facet_grid = NULL,
  facet_wrap = NULL,
  scales = "fixed",
  dodge = 0.2,
  mxy = 15,
  nrow = 5,
  plotPoints = TRUE,
  colour_scale = NULL,
  fill_scale = NULL,
  showPlot = FALSE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	list of resLst objects
type	type of biomass ("B_yxmsz","B_yxmz","B_yxz","B_yxms","B_yxm","B_yx")
years	"all" or numerical vector of years to include
numRecent	number of "recent" years to plot
facet_grid	formula for faceting using facet_grid
facet_wrap	formula for faceting using facet_wrap
scales	ggplot2 scales option for facet_grid
dodge	width to dodge overlapping series
mxy	max number of years per page
nrow	number of rows per page, when facet_wrap'ing
plotPoints	flag to include points
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
showPlot	flag (T/F) to show plot
pdf	creates pdf, if not NULL
verbose	flag (T/F) to print diagnostic information

Details

This function compares biomass estimates (aggregated or as size comps, depending on "type") by year among several models. It uses rTCSAM2013::getMDFR.Pop.Quantities, rsimTCSAM::getMDFR.Pop.Quantities, and to extract model results, and rTCSAM02::getMDFR.Pop.Quantities, and plotMDFR.XY to plot them. The level of aggregation is based on the value for "type" (unlike compreResults.Pop.Biomass, where a cast'ing formula is specified.)

Value

ggplot2 object

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.