compareFits.ZScores.PrNatZ: Compare Pearson's residuals or nll residuals from size comps...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Compare Pearson's residuals or nll residuals from size comps by fleet among several model runs

Description

Function to compare Pearson's residuals or nll residuals from size comps by fleet among several model runs.

Usage

compareFits.ZScores.PrNatZ(
  objs = NULL,
  mdfr = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "total"),
  residuals.type = c("pearsons", "nlls"),
  tcsam2013.type = c("PRs_yxmz", "PRs_yxz"),
  BRT = 4,
  showPlot = FALSE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
mdfr	dataframe from call to extractFits.ZScores.PrNatZ (as alternative to objs)
fleets	names of fleets to include (or "all" or NULL to include all)
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained',or 'total')
residuals.type	residual type for tcsam02 models ('pearsons' or 'nlls')
tcsam2013.type	pearsons residuals type for tcsam2013 models ("PRs_yxmz","PRs_yxz")
BRT	bad residual threshold (threshold to flag bad residuals, if residuals.type is 'pearsons')
showPlot	flag (T/F) to show plot
pdf	name for output pdf file
verbose	flag (T/F) to print diagnostic information

Details

Uses extractFits.ZScores.PrNatZ() to extract data for plotting. Also uses wtsUtilities::printGGList().

Value

non-nested list of ggplot2 objects, with captions as names

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.