Files in wStockhausen/rCompTCMs
Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/compareData.EffortTimeSeries.R
R/compareData.FleetTimeSeriesABs.R
R/compareData.GrowthData.R
R/compareDiffs.R
R/compareFits.AbundanceData.R
R/compareFits.BiomassData.R
R/compareFits.EffectiveNs.R
R/compareFits.EffortData.R
R/compareFits.GrowthData.R
R/compareFits.MaturityOgiveData.R
R/compareFits.MeanSizeComps.R
R/compareFits.SingleYearSizeComps.R
R/compareFits.SizeComps.R
R/compareFits.ZScores.Abundance.R
R/compareFits.ZScores.Biomass.R
R/compareFits.ZScores.PrNatZ.R
R/compareResults.Fisheries.CatchAbundance.R
R/compareResults.Fisheries.CatchBiomass.R
R/compareResults.Fisheries.Catchability.R
R/compareResults.Fisheries.RetFcns.R
R/compareResults.Fisheries.SelFcns.R
R/compareResults.ManagementQuantities.R
R/compareResults.ParameterValues.R
R/compareResults.Pop.Abundance.R
R/compareResults.Pop.Abundance1.R
R/compareResults.Pop.Biomass.R
R/compareResults.Pop.Biomass1.R
R/compareResults.Pop.CohortProgression.R
R/compareResults.Pop.GrowthMatrices.LinePlots.R
R/compareResults.Pop.GrowthMatrices.R
R/compareResults.Pop.IF.NatZ.R
R/compareResults.Pop.MatureBiomass.R
R/compareResults.Pop.MaturityOgives.R
R/compareResults.Pop.MeanGrowth.R
R/compareResults.Pop.MeanGrowthPlusProbs.R
R/compareResults.Pop.NatZ.LinePlots.R
R/compareResults.Pop.NaturalMortality.BarPlot.R
R/compareResults.Pop.NaturalMortality.R
R/compareResults.Pop.PrM2M.R
R/compareResults.Pop.Processes.R
R/compareResults.Pop.Quantities.R
R/compareResults.Pop.RecSizeDistribution.R
R/compareResults.Pop.Recruitment.R
R/compareResults.Surveys.Abundance.R
R/compareResults.Surveys.Availability.R
R/compareResults.Surveys.AvlFcns.R
R/compareResults.Surveys.Biomass.R
R/compareResults.Surveys.CaptureProbs.R
R/compareResults.Surveys.Catchability.R
R/compareResults.Surveys.SelFcns.R
R/compareResults.sdRep.DerivedVars.R
R/compareResults.sdRep.RecAndSSB.R
R/computeDiffs.R
R/createLatexForTable.ParamValues.Numbers.R
R/createTables.R
R/dropAggregatedDataLevels.R
R/extractFits.AllScores.ACD.R
R/extractFits.MeanSizeComps.R
R/extractFits.SizeComps.R
R/extractFits.ZScores.ACD.R
R/extractFits.ZScores.PrNatZ.R
R/extractMDFR.Data.FleetTimeSeriesABs.R
R/extractMDFR.ExploitationRates.R
R/extractMDFR.Fisheries.CatchAbundance.R
R/extractMDFR.Fisheries.CatchBiomass.R
R/extractMDFR.Fisheries.Catchability.R
R/extractMDFR.Fisheries.RetFcns.R
R/extractMDFR.Fisheries.SelFcns.R
R/extractMDFR.Fits.AbundanceData.R
R/extractMDFR.Fits.BiomassData.R
R/extractMDFR.Fits.EffectiveNs.R
R/extractMDFR.Fits.GrowthData.R
R/extractMDFR.Fits.MaturityOgiveData.R
R/extractMDFR.Pop.Abundance.R
R/extractMDFR.Pop.Biomass.R
R/extractMDFR.Pop.CohortProgression.R
R/extractMDFR.Pop.GrowthMatrices.R
R/extractMDFR.Pop.MatureBiomass.R
R/extractMDFR.Pop.MeanGrowth.R
R/extractMDFR.Pop.NaturalMortality.R
R/extractMDFR.Pop.PrM2M.R
R/extractMDFR.Pop.RecSizeDistribution.R
R/extractMDFR.Pop.Recruitment.R
R/extractMDFR.Results.ParameterValues.R
R/extractMDFR.Results.ParametersAtBounds.R
R/extractMDFR.Surveys.Abundance.R
R/extractMDFR.Surveys.Availability.R
R/extractMDFR.Surveys.AvlFcns.R
R/extractMDFR.Surveys.Biomass.R
R/extractMDFR.Surveys.CaptureProbs.R
R/extractMDFR.Surveys.Catchability.R
R/extractMDFR.Surveys.SelFcns.R
R/getMDFR.CanonicalFormat.R
R/getResLsts.R
R/modelComparisons.Characteristics.Fisheries.R
R/modelComparisons.Characteristics.Surveys.R
R/modelComparisons.InputData.R
R/modelComparisons.ManagementQuantities.R
R/modelComparisons.ModelFits.ACD.Fisheries.R
R/modelComparisons.ModelFits.ACD.R
R/modelComparisons.ModelFits.ACD.Surveys.R
R/modelComparisons.ModelFits.OtherData.R
R/modelComparisons.ModelFits.ZCs.R
R/modelComparisons.ModelFits.ZCsByYear.Fisheries.R
R/modelComparisons.ModelFits.ZCsByYear.R
R/modelComparisons.ModelFits.ZCsByYear.Surveys.R
R/modelComparisons.ParameterTables.R
R/modelComparisons.PopProcesses.R
R/modelComparisons.PopQuantities.R
R/modelComparisons.R
R/plotLollipops.R
R/plotMDFR.BarLine.R
R/plotMDFR.Bars.R
R/plotMDFR.Bubbles.R
R/plotMDFR.Fits.SizeComps.R
R/plotMDFR.Fits.TimeSeries.R
R/plotMDFR.Fits.TimeSeries1.R
R/plotMDFR.XY.R
R/plotPop.CohortProgression.R
R/plotPop.MeanGrowth.R
R/plotPop.MeanGrowthPlusProbs.R
R/plotPop.NaturalMortality.R
R/plotPop.PrM2M.R
R/plotPop.PrMolt.R
R/plotPop.RecSizeDistribution.R
R/plotZScores.R
R/printResults.ParameterValues.R
R/printResults.ParametersAtBounds.R
R/retroFunctions.R
R/retroPlots.R
README.md
inst/rmd/modelComparisons.EstimatedCharacteristics.Fisheries.Rmd
inst/rmd/modelComparisons.EstimatedCharacteristics.Surveys.Rmd
inst/rmd/modelComparisons.EstimatedQuantities.AllFleets.Rmd
inst/rmd/modelComparisons.EstimatedQuantities.Fisheries.Rmd
inst/rmd/modelComparisons.EstimatedQuantities.Surveys.Rmd
inst/rmd/modelComparisons.InputData.Rmd
inst/rmd/modelComparisons.InputSurveyData.Rmd
inst/rmd/modelComparisons.ManagementQuantities.Rmd
inst/rmd/modelComparisons.ModelFits.ACD.Fisheries.Rmd
inst/rmd/modelComparisons.ModelFits.ACD.Rmd
inst/rmd/modelComparisons.ModelFits.ACD.Surveys.Rmd
inst/rmd/modelComparisons.ModelFits.OtherData.Rmd
inst/rmd/modelComparisons.ModelFits.ZCs.All.Rmd
inst/rmd/modelComparisons.ModelFits.ZCs.Fisheries.Rmd
inst/rmd/modelComparisons.ModelFits.ZCs.Surveys.Rmd
inst/rmd/modelComparisons.ModelFits.ZCsByYear.Fisheries.Rmd
inst/rmd/modelComparisons.ModelFits.ZCsByYear.Rmd
inst/rmd/modelComparisons.ModelFits.ZCsByYear.Surveys.Rmd
inst/rmd/modelComparisons.ParameterTables.Rmd
inst/rmd/modelComparisons.PopProcesses.Rmd
inst/rmd/modelComparisons.PopQuantities.Rmd
inst/rmd/modelComparisons.Rmd
man/compareData.EffortTimeSeries.Rd
man/compareData.FleetTimeSeriesABs.Rd
man/compareData.GrowthData.Rd
man/compareDiffs.Rd
man/compareFits.AbundanceData.Rd
man/compareFits.BiomassData.Rd
man/compareFits.EffectiveNs.Rd
man/compareFits.EffortData.Rd
man/compareFits.GrowthData.Rd
man/compareFits.MaturityOgiveData.Rd
man/compareFits.MeanSizeComps.Rd
man/compareFits.SingleYearSizeComps.Rd
man/compareFits.SizeComps.Rd
man/compareFits.ZScores.Abundance.Rd
man/compareFits.ZScores.Biomass.Rd
man/compareFits.ZScores.PrNatZ.Rd
man/compareResults.Fisheries.CatchAbundance.Rd
man/compareResults.Fisheries.CatchBiomass.Rd
man/compareResults.Fisheries.Catchability.Rd
man/compareResults.Fisheries.RetFcns.Rd
man/compareResults.Fisheries.SelFcns.Rd
man/compareResults.ManagementQuantities.Rd
man/compareResults.ParameterValues.Rd
man/compareResults.Pop.Abundance.Rd
man/compareResults.Pop.Abundance1.Rd
man/compareResults.Pop.Biomass.Rd
man/compareResults.Pop.Biomass1.Rd
man/compareResults.Pop.CohortProgression.Rd
man/compareResults.Pop.GrowthMatrices.LinePlots.Rd
man/compareResults.Pop.GrowthMatrices.Rd
man/compareResults.Pop.IF.NatZ.Rd
man/compareResults.Pop.MatureBiomass.Rd
man/compareResults.Pop.MaturityOgives.Rd
man/compareResults.Pop.MeanGrowth.Rd
man/compareResults.Pop.MeanGrowthPlusProbs.Rd
man/compareResults.Pop.NatZ.LinePlots.Rd
man/compareResults.Pop.NaturalMortality.BarPlot.Rd
man/compareResults.Pop.NaturalMortality.Rd
man/compareResults.Pop.PrM2M.Rd
man/compareResults.Pop.Processes.Rd
man/compareResults.Pop.Quantities.Rd
man/compareResults.Pop.RecSizeDistribution.Rd
man/compareResults.Pop.Recruitment.Rd
man/compareResults.Surveys.Abundance.Rd
man/compareResults.Surveys.Availability.Rd
man/compareResults.Surveys.AvlFcns.Rd
man/compareResults.Surveys.Biomass.Rd
man/compareResults.Surveys.CaptureProbs.Rd
man/compareResults.Surveys.Catchability.Rd
man/compareResults.Surveys.SelFcns.Rd
man/compareResults.sdRep.DerivedVars.Rd
man/compareResults.sdRep.RecAndSSB.Rd
man/computeDiffs.Rd
man/createLatexForTable.ParamValues.Numbers.Rd
man/createTable.ParamVals.Rd
man/createTable.PsAtBs.Rd
man/dropAggregatedDataLevels.Rd
man/extractFits.AllScores.ACD.Rd
man/extractFits.MeanSizeComps.Rd
man/extractFits.SizeComps.Rd
man/extractFits.ZScores.ACD.Rd
man/extractFits.ZScores.PrNatZ.Rd
man/extractMDFR.Data.FleetTimeSeriesABs.Rd
man/extractMDFR.ExploitationRates.Rd
man/extractMDFR.Fisheries.CatchAbundance.Rd
man/extractMDFR.Fisheries.CatchBiomass.Rd
man/extractMDFR.Fisheries.Catchability.Rd
man/extractMDFR.Fisheries.RetFcns.Rd
man/extractMDFR.Fisheries.SelFcns.Rd
man/extractMDFR.Fits.AbundanceData.Rd
man/extractMDFR.Fits.BiomassData.Rd
man/extractMDFR.Fits.EffectiveNs.Rd
man/extractMDFR.Fits.GrowthData.Rd
man/extractMDFR.Fits.MaturityOgiveData.Rd
man/extractMDFR.Pop.Abundance.Rd
man/extractMDFR.Pop.Biomass.Rd
man/extractMDFR.Pop.CohortProgression.Rd
man/extractMDFR.Pop.GrowthMatrices.Rd
man/extractMDFR.Pop.MatureBiomass.Rd
man/extractMDFR.Pop.MeanGrowth.Rd
man/extractMDFR.Pop.NaturalMortality.Rd
man/extractMDFR.Pop.PrM2M.Rd
man/extractMDFR.Pop.RecSizeDistribution.Rd
man/extractMDFR.Pop.Recruitment.Rd
man/extractMDFR.Results.ParameterValues.Rd
man/extractMDFR.Results.ParametersAtBounds.Rd
man/extractMDFR.Surveys.Abundance.Rd
man/extractMDFR.Surveys.Availability.Rd
man/extractMDFR.Surveys.AvlFcns.Rd
man/extractMDFR.Surveys.Biomass.Rd
man/extractMDFR.Surveys.CaptureProbs.Rd
man/extractMDFR.Surveys.Catchability.Rd
man/extractMDFR.Surveys.SelFcns.Rd
man/getMDFR.CanonicalFormat.Rd
man/getResLsts.Rd
man/modelComparisons.Characteristics.Fisheries.Rd
man/modelComparisons.Characteristics.Surveys.Rd
man/modelComparisons.ModelFits.ACD.Fisheries.Rd
man/modelComparisons.ModelFits.ACD.Rd
man/modelComparisons.ModelFits.ACD.Surveys.Rd
man/modelComparisons.ModelFits.OtherData.Rd
man/modelComparisons.ModelFits.ZCs.Rd
man/modelComparisons.ModelFits.ZCsByYear.Fisheries.Rd
man/modelComparisons.ModelFits.ZCsByYear.Rd
man/modelComparisons.ModelFits.ZCsByYear.Surveys.Rd
man/modelComparisons.ParameterTables.Rd
man/modelComparisons.PopProcesses.Rd
man/modelComparisons.PopQuantities.Rd
man/modelComparisons.Rd
man/plotLollipops.ACD.Rd
man/plotLollipops.GrowthData.Rd
man/plotLollipops.MaturityOgiveData.Rd
man/plotLollipops.ZCs.Rd
man/plotMDFR.BarLine.Rd
man/plotMDFR.Bars.Rd
man/plotMDFR.Bubbles.Rd
man/plotMDFR.Fits.SizeComps.Rd
man/plotMDFR.Fits.TimeSeries.Rd
man/plotMDFR.Fits.TimeSeries1.Rd
man/plotMDFR.XY.Rd
man/plotPop.CohortProgression.Rd
man/plotPop.MeanGrowth.Rd
man/plotPop.MeanGrowthPlusProbs.Rd
man/plotPop.NaturalMortality.Rd
man/plotPop.PrM2M.Rd
man/plotPop.PrMolt.Rd
man/plotPop.RecSizeDistribution.Rd
man/plotZScores.Rd
man/printResults.ParameterValues.Rd
man/printResults.ParametersAtBounds.Rd
man/retroCalcMohnsRho.Rd
man/retroGetMDFR.Rd
man/retroPlotFitsAsTimeSeries.Rd
man/retroPlotOFLResults.Rd
man/retroPlotTimeSeries.Rd
man/retroPlotValuesAsBars.Rd
man/retroPlotValuesBySize.Rd
rCompTCMs.Rproj
