compareResults.Fisheries.CatchAbundance: Function to compare estimated fishery catch abundance by year...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to compare estimated fishery catch abundance by year among several models

Description

This function compares estimated fishery catch abundance by year among several models.

Usage

compareResults.Fisheries.CatchAbundance(
  objs,
  fleets = "all",
  category = c("captured", "discarded", "retained", "discard mortality", "index"),
  cast = NULL,
  facet_grid = NULL,
  facet_wrap = NULL,
  scales = "fixed",
  dodge = 0.2,
  years = "all",
  mxy = 15,
  nrow = 5,
  lnscale = FALSE,
  plotPoints = TRUE,
  colour_scale = NULL,
  fill_scale = NULL,
  showPlot = FALSE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	list of resLst objects
fleets	names of fleets to include (or "all")
category	'captured','discarded','retained','discard mortality', or 'index'
cast	cast'ing formula for aggregating by factors (x,m,s,z)
facet_grid	formula (or string version of formula) for faceting using facet_grid
facet_wrap	one-sided formula (e.g., "~y+x") or character vector (e.g., c('y','x')) for faceting using facet_wrap
scales	scales parameter for use with facet_grid/facet_wrap
dodge	width to dodge overlapping series
years	'all' or vector of years to include
mxy	max number of years per page
nrow	number of rows per page, when facet_wrap'ing
lnscale	use log scale on y axis
plotPoints	flag to plot points
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
showPlot	flag (T/F) to show plot
pdf	creates pdf, if not NULL
verbose	flag (T/F) to print diagnostic information

Details

If 'z' is a cast'ing factor, then a set of annual size composition plots are produced. Otherwise, a set of time series plots are produced.

Value

list of ggplot2 objects

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.