compareResults.Pop.RecSizeDistribution: Compare recruitment size distributions among several model...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Compare recruitment size distributions among several model runs

Description

Function to compare recruitment size distributions among several model runs.

Usage

compareResults.Pop.RecSizeDistribution(
  objs,
  scaleToDensity = FALSE,
  aggToCutpts = FALSE,
  cutpts = seq(25, 185, 5),
  dodge = 0.2,
  plotPoints = FALSE,
  colour_scale = NULL,
  fill_scale = NULL,
  showPlot = TRUE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	list of resLst objects (or a dataframe from extractMDFR.Pop.RecSizeDistribution())
scaleToDensity	flag to scale abundance to 1-mm size bins
aggToCutpts	flag to aggregate (rebin) to provided cutpts
cutpts	cutpoints to aggregate to
dodge	width to dodge overlapping series
plotPoints	flag to include points (default: FALSE)
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
showPlot	flag to print plot to current device
pdf	name for output pdf file
verbose	flag (T/F) to print diagnostic information

Details

If scaleToDensity is true, the size distribution is scaled to abundance/mm to allow easier comparison between models with different bin sizes. If aggToCutpts is true, the distribution(s) are re-binned (aggregated) to a common set of cutpoints. If objs is a list of resLst objects, then extractMDFR.Pop.RecSizeDistribution() is called first to obtain the size distributions.

Value

ggplot object

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.