compareResults.Fisheries.Catchability: Function to plot fishery catchabilities by year using ggplot2

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to plot fishery catchabilities by year using ggplot2

Description

This function plots fishery catchability estimates by year, sex and maturity state.

Usage

compareResults.Fisheries.Catchability(
  objs,
  fleets = "all",
  years = "all",
  cast = "x",
  dodge = 0.2,
  facet_grid = "x~.",
  scales = "free_y",
  plotPoints = TRUE,
  colour_scale = NULL,
  fill_scale = NULL,
  pdf = NULL,
  showPlot = FALSE,
  verbose = FALSE
)

Arguments

objs	list of resLst objects
fleets	vector of fisheries to plot, or "all"
years	vector of years to show, or 'all' to show all years
cast	formula to exclude factors from "averaging" over
dodge	width to dodge overlapping series
facet_grid	ggplot2 formula to produce figure with gridded facets
scales	parameter passed to ggplot2::facet_grid()
plotPoints	flag to plot points
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
pdf	creates pdf, if not NULL
showPlot	flag (T/F) to show plot
verbose	flag (T/F) to print diagnostic information

Details

None.

Value

lists ofggplot2 objects, nested by fishery or an empty list if year is NULL

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.