compareResults.Pop.Abundance: Function to compare estimated population abundance by year...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to compare estimated population abundance by year among several models

Description

This function compares estimated population abundance by year among several models.

Usage

compareResults.Pop.Abundance(
  objs,
  cast = "x",
  facet_grid = NULL,
  facet_wrap = NULL,
  dodge = 0.2,
  years = "all",
  mxy = 15,
  nrow = 5,
  lnscale = FALSE,
  scales = "fixed",
  plotPoints = TRUE,
  colour_scale = NULL,
  fill_scale = NULL,
  showPlot = FALSE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	list of resLst objects
cast	casting formula for excluding x,m,s,z factor levels from sums across the unspecified factors
facet_grid	formula for faceting using facet_grid
facet_wrap	formula for faceting using facet_wrap
dodge	width to dodge overlapping series
years	'all' or vector of years to include
mxy	max number of years per page
nrow	number of rows per page, when facet_wrap'ing
lnscale	use log scale on y axis
scales	scales parameter for facet_grid/facet_wrap
plotPoints	flag to include points
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
showPlot	flag (T/F) to show plot
pdf	creates pdf, if not NULL
verbose	flag (T/F) to print diagnostic information

Details

If 'z' is a cast'ing factor, then a set of annual size composition plots are produced. Otherwise, a set of time series plots are produced. Results are extracted using rTCSAM2013::getMDFR.Pop.Abundance, rsimTCSAM::getMDFR.Pop.Abundance, and/or rTCSAM02::getMDFR.Pop.Abundance, as appropriate, and cast to aggregate. This differs from compareResults.Pop.Abundance1.

Value

ggplot2 object

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.