compareResults.Surveys.Abundance: Function to compare estimated survey abundance by year among...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to compare estimated survey abundance by year among several models

Description

This function compares estimated survey abundance by year among several models.

Usage

compareResults.Surveys.Abundance(
  objs,
  fleets = "all",
  cast = "x",
  years = "all",
  facet_grid = NULL,
  facet_wrap = NULL,
  scales = "fixed",
  dodge = 0.2,
  mxy = 15,
  nrow = 5,
  lnscale = FALSE,
  plotPoints = FALSE,
  colour_scale = NULL,
  fill_scale = NULL,
  showPlot = FALSE,
  pdf = NULL,
  verbose = FALSE
)

Arguments

objs	list of resLst objects
fleets	vector of fleets to plot, or "all"
cast	casting formula for excluding x,m,s,z factor levels from sums across the unspecified factors
years	'all' or vector of years to include
facet_grid	formula for faceting using facet_grid
facet_wrap	formula for faceting using facet_wrap
scales	parameter passed to ggplot2::facet_grid()
dodge	width to dodge overlapping series
mxy	max number of years per page
nrow	number of rows per page, when facet_wrap'ing
lnscale	use log scale on y axis
plotPoints	flag to include points (default: FALSE)
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)
showPlot	flag (T/F) to show plot
pdf	creates pdf, if not NULL
verbose	flag (T/F) to print diagnostic information

Details

If 'z' is a cast'ing factor, then a set of annual size composition plots are produced. Otherwise, a set of time series plots are produced.

Value

ggplot2 object

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.