compareFits.SingleYearSizeComps: Compare fits to single-year size comps by fleet among several...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Compare fits to single-year size comps by fleet among several model runs

Description

Function to compare fits to single-year size comps by fleet among several model runs.

Usage

compareFits.SingleYearSizeComps(
  objs = NULL,
  mdfr = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  years = "all",
  colour = "case",
  facets = x + m + s ~ .,
  scales = "fixed",
  plot1stObs = TRUE,
  useBars = TRUE,
  usePins = FALSE,
  usePinsAndPts = FALSE,
  useLines = TRUE,
  usePoints = TRUE,
  pinSize = 0.2,
  lineSize = 0.2,
  pointSize = 1,
  alpha = 0.5,
  stripText = ggplot2::element_text(),
  pdf = NULL,
  showPlot = FALSE,
  verbose = FALSE
)

Arguments

objs	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
mdfr	dataframe from call to extractFits.SizeComps() (as alternative to objs)
fleets	names of fleets to include (or "all")
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', or 'total')
years	years to plot, as numerical vector
colour	column name for colours (default="case")
facets	formula for faceting (default = x+m+s~.)
scales	character string indicating how x and y axis scales are handled in faceting (default = "fixed")
plot1stObs	flag (T/F) to plot observations only from first case, or character vector cases cases from which to plot observations
useBars	flag to use bars for observations
usePins	flag to use pins for observations
usePinsAndPts	flag to add pts to observations when pins are used
useLines	flag to use lines for predictions
usePoints	flag to use points for predictions
pinSize	width of pin line
lineSize	prediction line size
pointSize	prediction point size
alpha	prediction transparency
stripText	ggplot2::element_text() object describing font and margin to use for panel strips
pdf	name for output pdf file
showPlot	flag (T/F) to show plot
verbose	flag (T/F) to print diagnostic information

Details

Uses extractFits.SizeComps() to extract results. Also uses wtsUtilities::printGGList().

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.