extractFits.MeanSizeComps: Extract fits to mean size comps by fleet among several model...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Extract fits to mean size comps by fleet among several model runs

Description

Function to extract fits to mean size comps by fleet among several model runs.

Usage

extractFits.MeanSizeComps(
  objs = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  years = "all",
  ci = 0.8,
  plot1stObs = TRUE,
  verbose = FALSE
)

Arguments

fleets	names of fleets to include (or "all")
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', or 'total')
years	years to plot, as numerical vector (or "all" to plot all years)
ci	confidence interval
plot1stObs	flag (T/F) to plot observations only from first case
verbose	flag (T/F) to print diagnostic information
obj	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
facet_grid	faceting formula for ggplot2::facet_grid()
pdf	name for output pdf file
showPlot	flag (T/F) to show plot

Details

Uses rTCSAM2013::getMDFR.SurveyQuantities(), rTCSAM2013::getMDFR.FisheryQuantities(), rTCSAM02::getMDFR.Fits.FleetData(). Also uses reshape2::dcast, wtsUtilities::calcCIs.

Value

dataframe in canonical format

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.