plotPop.CohortProgression: Function to plot cohort progression by year among several...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Function to plot cohort progression by year among several models

Description

This function plots cohort progression by year among several models.

Usage

plotPop.CohortProgression(
  mdfr,
  facet_grid = NULL,
  facet_wrap = NULL,
  dodge = 0.2,
  years = NULL,
  mxy = 4,
  nrow = 2,
  lnscale = FALSE,
  scales = "fixed",
  types = c("progression", "byyear"),
  plotPoints = FALSE,
  shapes = "s",
  plotLines = TRUE,
  linetypes = "ms",
  showPlot = FALSE,
  verbose = FALSE
)

Arguments

mdfr	melted data.frame with cohort progressions
facet_grid	formula for faceting using facet_grid
facet_wrap	formula for faceting using facet_wrap
dodge	width to dodge overlapping series
years	vector of years to include in plots (or NULL for all)
mxy	max number of years per page
nrow	number of rows per page, when facet_wrap'ing
lnscale	use log scale on y axis
scales	scales parameter for facet_grid/facet_wrap
types	cohort plot types ("progression","byyear")
plotPoints	flag to plot points
shapes	name of column for ggplot shape factors (defaults to 's' for shell condition)
plotLines	flag to plot cohorts as lines
linetypes	name of column for ggplot linetype factors (defaults to 'ms' for maturity + shell condition)
showPlot	flag (T/F) to show plot
verbose	flag (T/F) to print diagnostic information
colour_scale	ggplot2 colour scale to substitute for default (if not NULL)
fill_scale	ggplot2 fill scale to substitute for default (if not NULL)

Details

Can plot cohort abundance as a progression by stage for each model or as size distributions by year with colours indicating different models.

Value

a list of ggplot2 objects

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.