extractFits.ZScores.PrNatZ: Extract Pearson's or nll residuals from size comps by fleet...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Extract Pearson's or nll residuals from size comps by fleet among several model runs as dataframe

Description

Function to extract Pearson's or nll residuals from size comps by fleet among several model runs.

Usage

extractFits.ZScores.PrNatZ(
  objs = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "total"),
  residuals.type = c("pearsons", "nlls"),
  tcsam2013.type = c("PRs_yxmz", "PRs_yxz"),
  verbose = FALSE
)

Arguments

objs	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
fleets	names of fleets to include (or "all" or NULL to include all)
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained',or 'total')
residuals.type	residual type for tcsam02 models ('pearsons' or 'nlls')
tcsam2013.type	pearsons residuals type for tcsam2013 models ("PRs_yxmz","PRs_yxz")
verbose	flag (T/F) to print diagnostic information

Details

Uses rTCSAM2013::getMDFR.SurveyQuantities(), rTCSAM2013::getMDFR.FisheryQuantities(), rTCSAM02::getMDFR.ZScores.PrNatZ(). Also uses wtsUtilities::printGGList.

Value

dataframe in format for compareFits.ZScores.PrNatZ.

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.