extractMDFR.Fits.BiomassData: Extract fits to biomass time series by fleet among several...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Extract fits to biomass time series by fleet among several model runs

Description

Function to extract fits to biomass time series by fleet among several model runs.

Usage

extractMDFR.Fits.BiomassData(
  objs = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  ci = 0.8,
  fishery.pdfType = c("norm2", "normal", "lognormal"),
  verbose = FALSE
)

Arguments

fleets	names of fleets to include (or "all")
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', or 'total')
ci	confidence interval for plots
fishery.pdfType	assumed distribution for fishery data
verbose	flag (T/F) to print diagnostic information
obj	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects

Details

Uses rTCSAM2013::getMDFR.SurveyQuantities(), rTCSAM2013::getMDFR.FisheryQuantities(), rTCSAM02::getMDFR.Fits.FleetData().

Value

dataframe

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.