extractFits.SizeComps: Extract fits to size comps by fleet from several model runs

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Extract fits to size comps by fleet from several model runs

Description

Function to extract fits to size comps by fleet from several model runs.

Usage

extractFits.SizeComps(
  objs = NULL,
  fleets = "all",
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  years = "all",
  plot1stObs = TRUE,
  verbose = FALSE
)

Arguments

fleets	names of fleets to include (or "all")
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', or 'total')
years	years to plot, as numerical vector (or "all" to extract all years)
plot1stObs	flag (T/F) to extract observations only from first case, or vector of case names to return observations for
verbose	flag (T/F) to print diagnostic information
obj	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects

Details

Uses rTCSAM2013::getMDFR.SurveyQuantities(), rTCSAM2013::getMDFR.FisheryQuantities(), rTCSAM02::getMDFR.Fits.FleetData().

Value

dataframe in canonical format

wStockhausen/rCompTCMs documentation built on Aug. 27, 2024, 7:15 p.m.