extractMDFR.Data.FleetTimeSeriesABs: Extract time series of abundance or biommass data by fleet...

In wStockhausen/rCompTCMs: Package to compare TCSAM02, rsimTCSAM, and TCSAM2013 model runs

Extract time series of abundance or biommass data by fleet among several model scenarios

Description

Function to extract abundance or biomass time series data by fleet among several model scenarios.

Usage

extractMDFR.Data.FleetTimeSeriesABs(
  objs = NULL,
  fleet.type = c("survey", "fishery"),
  catch.type = c("index", "retained", "discard", "total"),
  data.type = c("abundance", "biomass"),
  fleets = "all",
  sexs = "all",
  maturity_states = "all",
  shell_conditions = "all",
  ci = 0.8,
  verbose = FALSE
)

Arguments

objs	object that can be converted into a list of tcsam2013.resLst and/or tcsam02.resLst objects
fleet.type	fleet type ('fishery' or 'survey')
catch.type	catch type ('index','retained', 'discard' or 'total')
data.type	data type ('abundance' or 'biomass')
fleets	vector of names of fleets to plot (or 'all')
sexs	vector of sexes to plot (or 'all')
maturity_states	vector of maturity states to plot (or 'all')
shell_conditions	vector of shell conditions to plot (or 'all')
ci	confidence intervals
verbose	flag (T/F) to print diagnostic information

Details

Uses rTCSAM02::getMDFR.Data.FleetTimeSeries().

Value

dataframe

wStockhausen/rCompTCMs documentation built on Sept. 12, 2023, 3:13 p.m.