circosPlot: To present a circos plot

In yingyonghui/CommPath:

To present a circos plot

Description

To present a circos plot

Usage

circosPlot(
  object,
  plot = "count",
  ident.col = NULL,
  filter = TRUE,
  select.ident = NULL,
  name.vert = FALSE
)

Arguments

object	CommPath object
plot	To present a circos plot for LR count ("count") or overall interaction intensity ("intensity") among cell clusters
ident.col	Vector of colors of each cluster; names of the ident.col vector are supposed to be assigned to indicate each color for each cluster
filter	Logical value indicating to present the circos plot for the filtered LR interactions or not; default is TRUE
select.ident	To highlight the interaction between a specific cluster class and others; if 'NULL', plot interaction for all clusters
name.vert	Should the group annotation be vertical to the grid? Defualt is FALSE

Value

Circos plot showing the ligand-receptor interaction

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.