filterPath: To remove those pathways containing only ligands which do not...
In yingyonghui/CommPath:
View source: R/CommPath-main.R
filterPath R Documentation
To remove those pathways containing only ligands which do not triger any pathway in the downstream clusters
Description
To remove those pathways containing only ligands which do not triger any pathway in the downstream clusters
Usage
filterPath(object, acti.path.dat, select.ident = NULL)
Arguments
object
CommPath object
acti.path.dat
Data frame of differential enrichment test result from diffAllPath
select.ident
To filter the pathways only for a selected cluster
Value
Data frame including the statistic result of filtered pathways in each cluster
yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.
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View source: R/CommPath-main.R
| filterPath | R Documentation |
To remove those pathways containing only ligands which do not triger any pathway in the downstream clusters
Description
To remove those pathways containing only ligands which do not triger any pathway in the downstream clusters
Usage
filterPath(object, acti.path.dat, select.ident = NULL)
Arguments
object |
CommPath object |
acti.path.dat |
Data frame of differential enrichment test result from diffAllPath |
select.ident |
To filter the pathways only for a selected cluster |
Value
Data frame including the statistic result of filtered pathways in each cluster
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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