findLigand: To find the upstream identity classes and ligands of specific...

In yingyonghui/CommPath:

To find the upstream identity classes and ligands of specific receptor expressed by specific downstream identity class

Description

To find the upstream identity classes and ligands of specific receptor expressed by specific downstream identity class

Usage

findLigand(object, select.ident = NULL, select.receptor = NULL, filter = TRUE)

Arguments

object	CommPath object
select.ident	Downstream identity class; if 'NULL', use all identity classes
select.receptor	Receptor expressed by downstream identity class; if 'NULL', use all receptors that are markers for the selected downstream identity class
filter	Logical value indicating to find the upstream identity class from the filtered LR interactions or not; default is TRUE

Value

Data frame including the interaction information

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.