dotPlot.LR: To present a dot plot for specific ligand-receptor pairs in...

In yingyonghui/CommPath:

To present a dot plot for specific ligand-receptor pairs in specific clusters

Description

To present a dot plot for specific ligand-receptor pairs in specific clusters

Usage

dotPlot.LR(
  object,
  ligand.ident = NULL,
  receptor.ident = NULL,
  ident.levels = NULL,
  top.n.inter = 10,
  filter = TRUE,
  return.data = FALSE
)

Arguments

object	CommPath object
ligand.ident	Vector containing the ligand ident
receptor.ident	Vector containing the receptor ident
ident.levels	Vector of levels of the identities
top.n.inter	Show the dotplot for the top n LR pairs with the largest product of Log2FC
filter	Logical value indicating to present the circos plot for the filtered LR interacyion or not; default is TRUE
return.data	Logical value indicating whether to return the data for the plot or not

Value

Dotplot showing the ligand-receptor interaction between the selected ligand.ident and receptor.ident

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.