findLRpath: To find those pathways in which the genesets show overlap...

In yingyonghui/CommPath:

To find those pathways in which the genesets show overlap with the marker ligand and receptor genes in our dataset

Description

To find those pathways in which the genesets show overlap with the marker ligand and receptor genes in our dataset

Usage

findLRpath(object, category = "all", pathway = NULL)

Arguments

object	CommPath object
category	Character to indicate which pathway to investigate; one of "go" (GO terms), "kegg" (for KEGG pathways), 'wiki' (for WikiPathways), and "reactome" (for reactome pathways), or "all" for all pathways
pathway	List of pathways or genesets defined by users; default is null. If set, the category parameter would be neglected

Value

CommPath object containing the ligand-receptor interaction information and the pathways showing overlap with the marker ligand and receptor genes in the dataset

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.