diffAllPath: To find differentially activated pathways in each identity...

In yingyonghui/CommPath:

To find differentially activated pathways in each identity class

Description

To find differentially activated pathways in each identity class

Usage

diffAllPath(object, method = "t.test", only.posi = FALSE, only.sig = FALSE)

Arguments

object	CommPath object
method	Method used for differential enrichment analysis, either 't.test' of 'wilcox.test'
only.posi	only save the information of pathways showing up regulation
only.sig	only save the information of pathways showing significant differences

Value

Data frame including the statistic result comparing the pathway enrichment sorces between cells in each cluster and all other clusters, the significant recetor and ligand in the pathways, and the corresponding up stream identity class and ligand

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.