pathTest: Differential enrichment analysis by t.test or wilcox.txt

In yingyonghui/CommPath:

Differential enrichment analysis by t.test or wilcox.txt

Description

Differential enrichment analysis by t.test or wilcox.txt

Usage

pathTest(
  acti.ident.score,
  group,
  select.ident.1,
  select.ident.2 = NULL,
  method = "t.test",
  only.posi = FALSE,
  only.sig = FALSE
)

Arguments

acti.ident.score	Matrix of pathway scores, pathway * cell
group	Vector of group labels of cells
select.ident.1	Identity class 1
select.ident.2	Identity class 2 for comparison
method	Method for hypothesis test, either 't.test' or 'wilcox.test'
only.posi	only save the information of pathways showing up regulation
only.sig	only save the information of pathways showing significant differences

Value

Data frame including the statistic result

yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.