scorePath: To find different enriched pathway between two group cells
In yingyonghui/CommPath:
scorePath R Documentation
To find different enriched pathway between two group cells
Description
To find different enriched pathway between two group cells
Usage
scorePath(object, method = "gsva", min.size = 10, ...)
Arguments
object
CommPath object
method
Method used for scoring the pathways, either 'gsva', 'UCell', or 'average'
min.size
Minimum size of overlaping genes between candidate pathways and the expression matrix
...
Extra parameters passed to GSVA::gsvaParam
Value
CommPath object with pathways activation scores stored in the slot pathway
yingyonghui/CommPath documentation built on June 15, 2025, 6:29 a.m.
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| scorePath | R Documentation |
To find different enriched pathway between two group cells
Description
To find different enriched pathway between two group cells
Usage
scorePath(object, method = "gsva", min.size = 10, ...)
Arguments
object |
CommPath object |
method |
Method used for scoring the pathways, either 'gsva', 'UCell', or 'average' |
min.size |
Minimum size of overlaping genes between candidate pathways and the expression matrix |
... |
Extra parameters passed to GSVA::gsvaParam |
Value
CommPath object with pathways activation scores stored in the slot pathway
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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