Files in zhengxwen/HIBAG
HLA Genotype Imputation with Attribute Bagging
.Rbuildignore
.gitattributes
.github/workflows/r.yml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Association.R
R/DataUtilities.R
R/HIBAG.R
R/SeqFormat.R
README.md
data/HLA_Type_Table.rdata
data/HapMap_CEU_Geno.rdata
inst/CITATION
inst/GPLv3
inst/doc/GeneInfo_hg18.txt
inst/doc/GeneInfo_hg19.txt
inst/doc/GeneInfo_hg38.txt
inst/doc/HIBAG_LICENSE.txt
inst/doc/case_control.txt
inst/extdata/HapMap_CEU.bed
inst/extdata/HapMap_CEU.bim
inst/extdata/HapMap_CEU.fam
inst/extdata/HapMap_CEU_Chr6.gds
inst/extdata/ModelList.RData
inst/extdata/OutOfBag.RData
inst/extdata/case_control.txt.xz
inst/extdata/v3.22.0/FeatureInfo.txt
inst/extdata/v3.22.0/Licence.txt
inst/extdata/v3.22.0/SeqAlign/a_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/b_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/c_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/dpa1_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/dpb1_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/dqa1_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/dqb1_prot.txt.xz
inst/extdata/v3.22.0/SeqAlign/drb1_prot.txt.xz
inst/extdata/v3.22.0/hla_nom_g.txt.xz
inst/extdata/v3.22.0/hla_nom_p.txt.xz
inst/include/LibHLA_ext.h
man/HIBAG-package.Rd
man/HLA_Type_Table.Rd
man/HapMap_CEU_Geno.Rd
man/hlaAASeqClass.Rd
man/hlaAllele.Rd
man/hlaAlleleClass.Rd
man/hlaAlleleDigit.Rd
man/hlaAlleleSubset.Rd
man/hlaAlleleToVCF.Rd
man/hlaAssocTest.Rd
man/hlaAttrBagClass.Rd
man/hlaAttrBagObj.Rd
man/hlaAttrBagging.Rd
man/hlaBED2Geno.Rd
man/hlaCheckAllele.Rd
man/hlaCheckSNPs.Rd
man/hlaClose.Rd
man/hlaCombineAllele.Rd
man/hlaCombineModelObj.Rd
man/hlaCompareAllele.Rd
man/hlaConvSequence.Rd
man/hlaDistance.Rd
man/hlaFlankingSNP.Rd
man/hlaGDS2Geno.Rd
man/hlaGeno2PED.Rd
man/hlaGenoAFreq.Rd
man/hlaGenoCombine.Rd
man/hlaGenoLD.Rd
man/hlaGenoMFreq.Rd
man/hlaGenoMRate.Rd
man/hlaGenoMRate_Samp.Rd
man/hlaGenoSubset.Rd
man/hlaGenoSwitchStrand.Rd
man/hlaLDMatrix.Rd
man/hlaLociInfo.Rd
man/hlaMakeSNPGeno.Rd
man/hlaModelFiles.Rd
man/hlaModelFromObj.Rd
man/hlaOutOfBag.Rd
man/hlaParallelAttrBagging.Rd
man/hlaPredMerge.Rd
man/hlaPredict.Rd
man/hlaPublish.Rd
man/hlaReport.Rd
man/hlaReportPlot.Rd
man/hlaSNPGenoClass.Rd
man/hlaSNPID.Rd
man/hlaSampleAllele.Rd
man/hlaSetKernelTarget.Rd
man/hlaSplitAllele.Rd
man/hlaSubModelObj.Rd
man/hlaUniqueAllele.Rd
man/plot.hlaAttrBagObj.Rd
man/print.hlaAttrBagClass.Rd
man/summary.hlaAlleleClass.Rd
man/summary.hlaSNPGenoClass.Rd
src/HIBAG.cpp
src/LibHLA.cpp
src/LibHLA.h
src/LibHLA_ext_avx.cpp
src/LibHLA_ext_avx2.cpp
src/LibHLA_ext_avx512bw.cpp
src/LibHLA_ext_avx512f.cpp
src/LibHLA_ext_avx512vpopcnt.cpp
src/LibHLA_ext_sse2.cpp
src/LibHLA_ext_sse4_2.cpp
src/Makevars
src/Makevars.win
src/samtools_ext.c
tests/runTests.R
vignettes/HIBAG.Rmd
vignettes/HIBAG_Ref.bib
vignettes/HLA_Association.Rmd
vignettes/Implementation.Rmd
