getcsv: Convert an list object to csv file.

In enviGCMS: GC/LC-MS Data Analysis for Environmental Science

Convert an list object to csv file.

Description

Convert an list object to csv file.

Usage

getcsv(list, name, mzdigit = 4, rtdigit = 1, type = "o", target = FALSE, ...)

Arguments

list	list with data as peaks list, mz, rt and group information
name	result name for csv and/or eic file, default NULL
mzdigit	m/z digits of row names of data frame, default 4
rtdigit	retention time digits of row names of data frame, default 1
type	csv format for further analysis, m means Metaboanalyst, a means xMSannotator, p means Mummichog(NA values are imputed by 'getimputation', and F test is used here to generate stats and p value), o means full information csv (for 'pmd' package), default o. mapo could output all those format files.
target	logical, preserve original rowname of data or not for target data, default FALSE.
...	other parameters for 'write.table'

Value

NULL, csv file

References

Li, S.; Park, Y.; Duraisingham, S.; Strobel, F. H.; Khan, N.; Soltow, Q. A.; Jones, D. P.; Pulendran, B. PLOS Computational Biology 2013, 9 (7), e1003123. Xia, J., Sinelnikov, I.V., Han, B., Wishart, D.S., 2015. MetaboAnalyst 3.0—making metabolomics more meaningful. Nucl. Acids Res. 43, W251–W257.

Examples

## Not run: 
data(list)
getcsv(list,name='demo')

## End(Not run)

enviGCMS documentation built on Feb. 16, 2023, 8:08 p.m.