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ModelMDscan: MDscan algortihm to detect TFBS within a sequence

ModelMDscan: MDscan algortihm to detect TFBS within a sequence
In MEET: MEET: Motif Elements Estimation Toolkit

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/ModelMDscan.R

Description

MDscan algorithm is used to construct a PWM model of the intput TFBS sequences. The returned values is the file with the motif

Usage

1
ModelMDscan(iicc)

Arguments

iicc

options of the MEET program

Details

The output is the name of the file where the results are writen

Value

output:

nameMDscan

name of the MDscan file

Author(s)

Erola Pairo <epairo@ibecbarcelona.eu>

See Also

MEET, kfold.MDscan

Examples

1
2
3
data(iicc)
iicc$parameterIdeal<-iicc$parameter
model<-ModelMDscan(iicc)

MEET documentation built on May 2, 2019, 5:52 p.m.

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