motif.mast: Read output mast
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Author(s)
Examples
Description
This function reads the output of MAST
Usage
1
motif.mast(input, Factortrans, k, m)
Arguments
input
Output MAST
Factortrans
A set of aligned nucleotide sequences
k
Length DNA candidate sequence
m
Number of TFBS sequence used on leave-one-out cross-training
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
Examples
1
2
3
4
data(TranscriptionFactor)
data(iicc)
Factortrans<-TranscriptionFactor
#motif.mast(input,Factortrans,k=length(iicc$DNA),m=1)
MEET documentation built on May 2, 2019, 5:52 p.m.
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Description Usage Arguments Author(s) Examples
Description
This function reads the output of MAST
Usage
1 | motif.mast(input, Factortrans, k, m)
|
Arguments
input |
Output MAST |
Factortrans |
A set of aligned nucleotide sequences |
k |
Length DNA candidate sequence |
m |
Number of TFBS sequence used on leave-one-out cross-training |
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
Examples
1 2 3 4 | data(TranscriptionFactor)
data(iicc)
Factortrans<-TranscriptionFactor
#motif.mast(input,Factortrans,k=length(iicc$DNA),m=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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