writeMEME: Write a training matrix in a MEME/MAST format
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
This function rewrites a training matrix (a set of aligned nucleotide sequences) in a MEME/MAST format.
Usage
1
writeMEME(matriu, m)
Arguments
matriu
A set of aligned nucleotide sequences
m
Number of TFBS sequence used on leave-one-out cross-training
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEME,transMEME,DMEME,DtransMEMEME
Examples
1
2
3
data(TranscriptionFactor)
matriu<-TranscriptionFactor
writeMEME(matriu, m=1)
MEET documentation built on May 2, 2019, 5:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Author(s) See Also Examples
Description
This function rewrites a training matrix (a set of aligned nucleotide sequences) in a MEME/MAST format.
Usage
1 | writeMEME(matriu, m)
|
Arguments
matriu |
A set of aligned nucleotide sequences |
m |
Number of TFBS sequence used on leave-one-out cross-training |
Author(s)
Erola Pairo <epairo@ibecbarcelona.eu> and Joan Maynou <joan.maynou@upc.edu>
See Also
MEME,transMEME,DMEME,DtransMEMEME
Examples
1 2 3 | data(TranscriptionFactor)
matriu<-TranscriptionFactor
writeMEME(matriu, m=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.