calculateTargetLengths: Plot target length for paired end
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Value
Author(s)
View source: R/targetLengths.R
Description
Calculate and plot a histogram of mapped target lengths
after trimmming of trim/2 of the data points at the lower and upper
end of the distribution
Usage
1
calculateTargetLengths(bamfile, save_dir, trim = 0.4)
Arguments
bamfile
Path to a bam file
save_dir
Path to a piplein results dir
trim
Amount of data to be trimmed at the edges
Value
Target length table and writes two files in save_dir/reports/images/TargetLenghts.[pdf|png]"
Author(s)
Jens Reeder, Melanie Huntley
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Value Author(s)
View source: R/targetLengths.R
Description
Calculate and plot a histogram of mapped target lengths after trimmming of trim/2 of the data points at the lower and upper end of the distribution
Usage
1 | calculateTargetLengths(bamfile, save_dir, trim = 0.4)
|
Arguments
bamfile |
Path to a bam file |
save_dir |
Path to a piplein results dir |
trim |
Amount of data to be trimmed at the edges |
Value
Target length table and writes two files in save_dir/reports/images/TargetLenghts.[pdf|png]"
Author(s)
Jens Reeder, Melanie Huntley
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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