detectRRNA: Detect rRNA Contamination in Reads
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Returns a named vector indicating if a read ID has rRNA contamination or not
Usage
1
detectRRNA(lreads, remove_tmp_dir = TRUE, save_dir = NULL)
Arguments
lreads
A list of ShortReadQ objects
remove_tmp_dir
boolean indicating whether or not to delete temp directory of gsnap results
save_dir
Save directory
Details
Given a genome and fastq data, each read in the fastq data is
aligned against the rRNA sequences for that genome
Value
a named logical vector indicating if a read has rRNA contamination
Author(s)
Cory Barr
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Returns a named vector indicating if a read ID has rRNA contamination or not
Usage
1 | detectRRNA(lreads, remove_tmp_dir = TRUE, save_dir = NULL)
|
Arguments
lreads |
A list of ShortReadQ objects |
remove_tmp_dir |
boolean indicating whether or not to delete temp directory of gsnap results |
save_dir |
Save directory |
Details
Given a genome and fastq data, each read in the fastq data is aligned against the rRNA sequences for that genome
Value
a named logical vector indicating if a read has rRNA contamination
Author(s)
Cory Barr
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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