filterByLength: Filter reads by length
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Value
View source: R/filterQuality.R
Description
Checks whether reads have at least a length of minlength.
Useful values are zero the rid of empty reads or 12 to match
the gsnap k-mer size.
Usage
1
filterByLength(lreads, minlength = 12, paired = FALSE)
Arguments
lreads
A set of reads as ShortReadQ object
minlength
Minimum length
paired
Indicates whether lreads has one of two elements
Value
A boolean vector indicating whether read passes filter
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Value
View source: R/filterQuality.R
Description
Checks whether reads have at least a length of minlength. Useful values are zero the rid of empty reads or 12 to match the gsnap k-mer size.
Usage
1 | filterByLength(lreads, minlength = 12, paired = FALSE)
|
Arguments
lreads |
A set of reads as ShortReadQ object |
minlength |
Minimum length |
paired |
Indicates whether lreads has one of two elements |
Value
A boolean vector indicating whether read passes filter
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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