callVariantsGATK: Variant calling via GATK
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Value
Author(s)
Description
Call variants via GATK using the pipeline framework.
Requires a GATK compatible genome with a name matching
the alignment genome to be installed in 'path.gatk_genome'
Usage
1
callVariantsGATK(bam.file)
Arguments
bam.file
Path to bam.file
Value
Path to variant file
Author(s)
Jens Reeder
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Value Author(s)
Description
Call variants via GATK using the pipeline framework. Requires a GATK compatible genome with a name matching the alignment genome to be installed in 'path.gatk_genome'
Usage
1 | callVariantsGATK(bam.file)
|
Arguments
bam.file |
Path to bam.file |
Value
Path to variant file
Author(s)
Jens Reeder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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