filterQuality: Filter reads by quality

Description Usage Arguments Details Value

View source: R/filterQuality.R

Description

Filtering reads by quality score. Discards reads that have more than a fraction of X nucleotides with a score below Y.

Usage

1
filterQuality(lreads)

Arguments

lreads

A list of ShortReadQ objects

Details

X and Y are controlled by global config variables X: filterQuality.minFrac Y: filterQuality.minQuality

Value

A list of quality filterered ShortReadQ objects


HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.