filterQuality: Filter reads by quality
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
View source: R/filterQuality.R
Description
Filtering reads by quality score.
Discards reads that have more than
a fraction of X nucleotides with a score below Y.
Usage
1
filterQuality(lreads)
Arguments
lreads
A list of ShortReadQ objects
Details
X and Y are controlled by global config variables
X: filterQuality.minFrac
Y: filterQuality.minQuality
Value
A list of quality filterered ShortReadQ objects
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value
View source: R/filterQuality.R
Description
Filtering reads by quality score. Discards reads that have more than a fraction of X nucleotides with a score below Y.
Usage
1 | filterQuality(lreads)
|
Arguments
lreads |
A list of ShortReadQ objects |
Details
X and Y are controlled by global config variables X: filterQuality.minFrac Y: filterQuality.minQuality
Value
A list of quality filterered ShortReadQ objects
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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