detectAdapterContam: Detect sequencing adapter contamination
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Value
View source: R/detectAdapterContam.R
Description
For each read or pair of read, search for specific
Illumina adapter sequences in the read. Flag if at least
one read has significant overlap with adapter.
Usage
1
detectAdapterContam(lreads, save_dir = NULL)
Arguments
lreads
List of reads as ShortRead objects
save_dir
Save directory of a pipeline run
Value
Boolean vector indicating vector contamination for each read
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/detectAdapterContam.R
Description
For each read or pair of read, search for specific Illumina adapter sequences in the read. Flag if at least one read has significant overlap with adapter.
Usage
1 | detectAdapterContam(lreads, save_dir = NULL)
|
Arguments
lreads |
List of reads as ShortRead objects |
save_dir |
Save directory of a pipeline run |
Value
Boolean vector indicating vector contamination for each read
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.