findVariantFile: Get a vcf filename given a HTSeqGenie directory
In HTSeqGenie: A NGS analysis pipeline.
Description
Usage
Arguments
Details
Value
Author(s)
Description
Get the filename of the variant file
Usage
1
findVariantFile(save_dir)
Arguments
dir_path
A character string containing a dir path
Details
Depending on the variant caller used and the version of
VariantAnotation used to create the file a file might have the
ending vcf.gz, vcf.bgz. To function hides all this mess.
Value
A character vector containing an existing filename, stops if 0 or more than 1
Author(s)
Jens Reeder
HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Get the filename of the variant file
Usage
1 | findVariantFile(save_dir)
|
Arguments
dir_path |
A character string containing a dir path |
Details
Depending on the variant caller used and the version of VariantAnotation used to create the file a file might have the ending vcf.gz, vcf.bgz. To function hides all this mess.
Value
A character vector containing an existing filename, stops if 0 or more than 1
Author(s)
Jens Reeder
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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