FastQStreamer.init: Open a streaming connection to a FastQ file

In HTSeqGenie: A NGS analysis pipeline.

Description

Open a streaming connection to a FastQ file

Usage

FastQStreamer.init(input_file, input_file2 = NULL, chunk_size,
  subsample_nbreads = NULL, max_nbchunks = NULL)

Arguments

input_file	Path to a FastQ file
input_file2	Optional path to a FastQ file. Default is NULL.
chunk_size	Number of reads per chunk
subsample_nbreads	Optional number of reads to subsample (deterministic) from the input files. Default is NULL.
max_nbchunks	Optional maximal number of chunks to read

Details

Only one FastQStreamer object can be open at any time.

Value

Nothing.

Author(s)

Gregoire Pau

See Also

FastQStreamer.getReads

HTSeqGenie documentation built on Nov. 8, 2020, 6:12 p.m.